Publications

2021

Astrophysics

  • van Zeist, W., Stevance, H., & Eldridge, J. (2021). Riroriro: Simulating gravitational waves and evaluating their detectability in Python. The Journal of Open Source Software, 6(59), 2968. doi:10.21105/joss.02968

Biology

  • Carter C W Jr, Wills P R. (2021). Reciprocally-coupled Gating: Strange Loops in Bioenergetics, Genetics, and Catalysis. Biomolecules 11:265 doi.org/10.3390/biom11020265
  • Carter C W Jr, Wills P R. (2021). The Roots of Genetic Coding in Aminoacyl-tRNA Synthetase Duality. Ann. Rev. Biochem. 90:18.1–18.25 doi.org/10.1146/annurev-biochem-071620-021218
  • Sriaporn, C., Campbell, K. A., Van Kranendonk, M. J., & Handley, K. M. (2021). Genomic adaptations enablingAcidithiobacillus distribution across wide-ranging hot spring temperatures and pHs. Microbiome, 9(1), 1-17.

Geology

  • Massini, J. G., Guido, D. M., Campbell, K. C., Sagasti, A. J., & Krings, M. (2021). Filamentous cyanobacteria and associated microorganisms, structurally preserved in a Late Jurassic chert from Patagonia, Argentina. Journal of South American Earth Sciences, 107, 103111.
  • Djokic, T., Van Kranendonk, M. J., Campbell, K. A., Havig, J. R., Walter, M. R., & Guido, D. M. (2021). A reconstructed subaerial hot spring field in the∼ 3.5 billion-year-old Dresser Formation, North Pole Dome, Pilbara Craton, Western Australia. Astrobiology, 21(1), 1-38.

Philosophy of Science

  • Parke EC (2021). Characterizing life: four dimensions and their relevance to origin of life research. In S Smoukov, J Seckbach & R Gordon (Eds.) Conflicting Models for the Origin of Life, volume in the series Astrobiology Perspectives on Life of the Universe. Wiley-Scrivener. In press.

 

2020

Astrophysics

  • Stanway, E. R., Eldridge, J. J., & Chrimes, A. A. (2020). Binary fraction indicators in resolved stellar populations and supernova-type ratios. Monthly Notices of the Royal Astronomical Society, 497(2), 2201-2212. doi:10.1093/mnras/staa2089
  • Lau, R. M., Eldridge, J. J., Hankins, M. J., Lamberts, A., Sakon, I., & Williams, P. M. (2020). Revisiting the Impact of Dust Production from Carbon-rich Wolf–Rayet Binaries. The Astrophysical Journal, 898(1), 74. doi:10.3847/1538-4357/ab9cb5
  • Farrell, E. J., Groh, J. H., Meynet, G., Eldridge, J. J., Ekström, S., & Georgy, C. (2020). snapshot: connections between internal and surface properties of massive stars. Monthly Notices of the Royal Astronomical Society, 495(4), 4659-4680. doi:10.1093/mnras/staa1360
  • Eldridge, J. J., Beasor, E. R., & Britavskiy, N. (2020). On ageing star clusters using red supergiants independent of the fraction of interacting binary stars. Monthly Notices of the Royal Astronomical Society: Letters, 495(1), l102-l107. doi:10.1093/mnrasl/slaa067
  • Farrell, E. J., Groh, J. H., Meynet, G., & Eldridge, J. J. (2020). The uncertain masses of progenitors of core-collapse supernovae and direct-collapse black holes. Monthly Notices of the Royal Astronomical Society: Letters, 494(1), l53-l58. doi:10.1093/mnrasl/slaa035
  • Stanway, E. R., Chrimes, A. A., Eldridge, J. J., & Stevance, H. F. (2020). Evaluating the impact of binary parameter uncertainty on stellar population properties. Monthly Notices of the Royal Astronomical Society. doi:10.1093/mnras/staa1166
  • Eldridge, J. J. (2020). The things binaries do …. Astronomy & Geophysics, 61(2), 2.24-2.29. doi:10.1093/astrogeo/ataa029
  • Tang, P. N., Eldridge, J. J., Stanway, E. R., & Bray, J. C. (2020). Dependence of gravitational wave transient rates on cosmic star formation and metallicity evolution history. Monthly Notices of the Royal Astronomical Society: Letters, 493(1), l6-l10. doi:10.1093/mnrasl/slz183

Biology

  • Wills P R, Carter C W Jr. (2020). Impedance matching and the choice between alternative pathways for the origin of genetic coding. Int. J. Mol. Sci. 21:7392 doi:10.3390/ijms21197392
  • Shore J A, Holland B R, Sumner J G, Nieselt K, Wills P R. (2020). The ancient Operational Code is embedded in the amino acid substitution matrix and aaRS phylogenies. J. Mol. Evol. 88:136–150  doi.org/10.1007/s00239-019-09918-z
  • Sriaporn, C., Campbell, K. A., Millan, M., Ruff, S. W., Van Kranendonk, M. J., & Handley, K. M. (2020). Stromatolitic digitate sinters form under wide‐ranging physicochemical conditions with diverse hot spring microbial communities. Geobiology, 18(5), 619-640.
  • van Dijk, B., Hogeweg, P., Doekes, H. M., & Takeuchi, N. (2020). Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements. ELife, 9, e56801. https://doi.org/10.7554/elife.56801

Cognitive Science

  • Egbert M. D. (2020) Marangoni Based Motile Oil-Droplets in Simulated Artificial Chemistry. Artificial Life Conference Proceedings, 32, 260–262
  • Woolford F., Egbert M. D. (2020) A Precarious Sensorimotor Sequence Reiterator for Modelling Enactive Habits. Artificial Life Conference Proceedings, 32, 771–779.
  • Kolezhitskiy, Y., Egbert M. D., Postlethwaite C. (2020) Dynamical Systems Analysis of a Protocell. Artificial Life Conference Proceedings, 32, 699–701.

Geology

  • Campbell, K. A., Nicholson, K., Lynne, B. Y., & Browne, P. R. (2020). 3D Anatomy of a 60-year-old siliceous hot spring deposit at Hipaua-Waihi-Tokaanu geothermal field, Taupo Volcanic Zone, New Zealand. Sedimentary Geology, 402, 105652.
  • Ruff, S. W., Campbell, K. A., Van Kranendonk, M. J., Rice, M. S., & Farmer, J. D. (2020). The case for ancient hot springs in Gusev crater, Mars. Astrobiology, 20(4), 475-499.
  • Teece, B. L., George, S. C., Djokic, T., Campbell, K. A., Ruff, S. W., & Van Kranendonk, M. J. (2020). Biomolecules from fossilized hot spring sinters: implications for the search for life on Mars. Astrobiology, 20(4), 537-551.

Philosophy of Science

  • Parke EC (2020). Dimensions of life definitions. In KC Smith & C Marical (Eds.), Social and conceptual issues in astrobiology (pp. 79–91). Oxford University Press.

 

2019

Astrophysics

  • Chrimes, A. A., Stanway, E. R., & Eldridge, J. J. (2019). Binary population synthesis models for core-collapse gamma-ray burst progenitors. Monthly Notices of the Royal Astronomical Society, 491(3), 3479-3495. doi:10.1093/mnras/stz3246
  • Stanway, E. R., & Eldridge, J. J. (2019). Interpreting galaxy properties with improved modelling.Proceedings of the International Astronomical Union, 15(S352), 84-97. doi:10.1017/s1743921319009050
  • Schady, P., Eldridge, J. J., Anderson, J., Chen, T. -W., Galbany, L., Kuncarayakti, H., & Xiao, L. (2019). The 50-100 pc scale parent stellar populations of type II supernovae and limitations of single star evolution models. Monthly Notices of the Royal Astronomical Society, 490(4), 4515-4535. doi:10.1093/mnras/stz2843
  • Gilkis, A., Vink, J. S., Eldridge, J. J., & Tout, C. A. (2019). Effects of winds on the leftover hydrogen in massive stars following Roche lobe overflow. Monthly Notices of the Royal Astronomical Society, 486(3), 4451-4462. doi:10.1093/mnras/stz1134
  • Eldridge, J. J., & Xiao, L. (2019). The distance, supernova rate, and supernova progenitors of NGC 6946.Monthly Notices of the Royal Astronomical Society: Letters, 485(1), l58-l61. doi:10.1093/mnrasl/slz030
  • Farrell, E. J., Groh, J. H., Meynet, G., Kudritzki, R., Eldridge, J. J., Georgy, C., . . . Yoon, S. -C. (2019). Impact of binary interaction on the evolution of blue supergiants. Astronomy & Astrophysics, 621, a22. doi:10.1051/0004-6361/201833657
  • Stanway, E. R., & Eldridge, J. J. (2019). Initial mass function variations cannot explain the ionizing spectrum of low metallicity starbursts. Astronomy & Astrophysics, 621, a105. doi:10.1051/0004-6361/201834359
  • Eldridge, J. J., Guo, N. -Y., Rodrigues, N., Stanway, E. R., & Xiao, L. (2019). Supernova lightCURVE POPulation Synthesis II: Validation against supernovae with an observed progenitor. Publications of the Astronomical Society of Australia, 36, e041. doi:10.1017/pasa.2019.31

Biology

  • Wills P R. (2019). Reflexivity, Coding and Quantum Biology. BioSystems 185:104027 DOI: 10.1016/j.biosystems.2019.104027
  • Carter C W Jr, Wills P R. (2019). Experimental solutions to problems defining the origin of codon-directed protein synthesis. BioSystems 183:103979 doi.org/10.1016/j.biosystems.2019.103979
  • Carter C W Jr, Wills P R. (2019). Class I and II aminoacyl-tRNA synthetase tRNA groove discrimination created the first synthetase•tRNA cognate pairs and was therefore essential to the origin of genetic coding. IUBMB Life 71,1088–1098 DOI 10.1002/iub.2094
  • Kamimura, A., Matsubara, Y. J., Kaneko, K., & Takeuchi, N. (2019). Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes. PLOS Computational Biology, 15(6), e1007094. https://doi.org/10.1371/journal.pcbi.1007094
  • Takeuchi, N., & Kaneko, K. (2019). The origin of the central dogma through conflicting multilevel selection. Proceedings of the Royal Society B: Biological Sciences, 286(1912), 20191359. https://doi.org/10.1098/rspb.2019.1359

Cognitive Science

  • Egbert, M. D., Gagnon J-S., Pérez-Mercader J. (2019) From chemical soup to computing circuit: Transforming a contiguous chemical medium into a logic gate network by modulating its external conditions. Journal of The Royal Society Interface 16(158). http://doi.org/10.1098/rsif.2019.0190
  • Egbert M. D., Kolezhitskiy Y., Virgo N. (2019) Steering the Growth of Adaptive Self-Preserving Dissipative Structures. in Fellermann H., Bacardit J., Goni-Moreno A., Fuchslin M. (Eds.) The 2019 Conference on Artificial Life 2019. No. 31, 255-262
  • Egbert M. D., Keane, A., Postlethwaite C. M., Wong, N. (2019) Can Signal Delay Be Functional? Including Delay In Evolved Robot Controllers. Artificial Life 25(4) 315-333.
  • Woolford F. M. , Egbert M. D. (2019) Behavioral Variety of a Node-Based Sensorimotor-to-Motor Map. Adaptive Behavior https://doi.org/10.1177/1059712319839061
  • Zarco M., Egbert M. D. (2019) Different Forms of Random Motor Activity Scaffold the Formation of Different Habits in a Simulated Robot. in Fellermann H., Bacardit J., Goni-Moreno A., Fuchslin M. (Eds.) The 2019 Conference on Artificial Life. No. 31, 582-589

Geology

  • Guido, D. M., Campbell, K. A., Foucher, F., & Westall, F. (2019). Life is everywhere in sinters: examples from Jurassic hot-spring environments of Argentine Patagonia. Geological Magazine, 156(9), 1631-1638.
  • Gourier, D., Binet, L., Calligaro, T., Cappelli, S., Vezin, H., Bréhéret, J., Hickman-Lewis, K., Gautret, P., Foucher, F., Campbell, K. and Westall, F., 2019. Extraterrestrial organic matter preserved in 3.33 Ga sediments from Barberton, South Africa. Geochimica et Cosmochimica Acta, 258, pp.207-225.

Innovation in Science Methodology

  • Egbert M. D. (2019) Real-Time Visualization and Interaction with Computational Artefacts. Abstract accepted for oral presentation at MethAL workshop at ALIFE2019.

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